| File Format: PDF/Adobe Acrobat - View as HTML Basic PCR Protocol. CGLab, 7/2002. 1). Wipe down the bench area with bleach and a new paper towel. 2). Take the PCR components out of the freezer to thaw ... www.sfsu.edu/~biology/ |
Tuesday, 9 October 2007
Basic PCR Protocol
Quantitative PCR Protocol
Quantitative PCR Protocol
Don Liu, Cecilia Schmidt, Tim Billings, and Muriel T. Davisson, The Jackson Laboratory
Genotyping Ts65Dn mice is based on doing simultaneous quantitative PCR amplification of a gene or genes in the Ts65Dn chromosome and a control gene on another chromosome (in this case Apob) and comparing the average change (delta) in threshold cycle (CT) between the Ts65Dn genes and the control gene. Doing a multiplexed reaction with an internal control avoids the need for determining DNA concentration and permits a relatively large range of variation in concentration of template DNA.
Although trisomic females vary in transmission of the trisomy the overall incidence of trisomy among progeny is only 19-25%. To streamline the typing process further the animals may be visually phenotyped before they are genotyped. The phenotype is variable and subtle but to the trained eye the trisomic mice can be identified. Ts65Dn mice are usually smaller than their control littermates at weaning. When one lifts the cage cover slowly, the trisomic mice often raise their heads and bring their ears to the side. When picked up by the tail some trisomic mice make a high-pitched continuous squeak. Ts65Dn mice often display stereotypic behavior, repeatedly jumping up and down by the side of the cage. When a pencil is placed vertically in front of the mouse, controls will run around it but Ts65Dn mice sit back on their haunches and "chatter". Phenotyping the mice is not 100% accurate nor should it be relied upon to classify mice, but it does help eliminate control animals that are not needed and reduce the number of mice that must be genotyped. The combination of visual phenotyping followed by qPCR genotyping should make identifying Ts65Dn mice easier than chromosomal typing for most researchers.
Full protocol here
General PCR Protocol
| Detailed PCR protocol from the web site of the Department of Biology, University of Michigan, USA. www.biology.lsa.umich.edu/research/ |
Protocol for PCR using Taq DNA Polymerase
| Protocol for PCR with Taq DNA Polymerase. Avoiding Contamination. PCR allows the production of more than 10 million copies of a target DNA sequence from ... www.fermentas.com/techinfo/pcr/dnaamplprotocol.htm - 22k - |
Protocol for PCR with Hot Start Taq DNA Polymerase
| File Format: PDF/Adobe Acrobat - View as HTML I. Protocol for PCR with Hot Start Taq DNA Polymerase. How to Avoid Contamination. During PCR, usually more than 10 million copies of a template DNA can be ... www.fermentas.com/profiles/modifyingenzymes/ |
Long PCR Protocol
| Protocol and guidelines for choice of conditions for PCR of long sequences (10 kb or larger). From Genetics Dept., Harvard Medical School, Boston, MA, USA. arep.med.harvard.edu/labgc/estep/longPCR_protocol.html Cached |
Quantitative PCR Protocol - The Jackson Laboratory
| The Jackson Laboratory Cytogenetic Models Resource maintains and distributes chromosome aberration stocks that provide primarily mouse models for Down ... www.jax.org/cyto/quanpcr.html - 32k - |
Thursday, 4 October 2007
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